Nemo Genome DB

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An Integrated Genomics Repository and Gene Expression Atlas for the genus Amphiprion.


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The reference genome of Amphiprion percula (orange clownfish)


Genome assembly (Nemo v1 assembly)


nemo_genome_pga_v1.fasta.gz [gz file, 254MB]
24 chromosomes, with unanchored scaffolds denoted by "Contig#" (# = serial number). The total assembly size of 908.9 megabases (Mb).


apercula_mtDNA.fasta.gz [gz file, 5.5KB]
Mitochondrial genome assembly. The total assembly size of 16,638 bases (b).


Gene set


apercula_gene_annotation.gff.gz [gz file, 7.4MB]
Gene structure information in GFF format, contains 26,597 gene models in the chromosome assembly coordinate.


apercula.mrna.fasta.gz [gz file, 13MB]
CDS sequences in FASTA format, contains 35,478 transcripts, corresponding to 26,597 gene models.


apercula.proteins.fasta.gz [gz file, 8.6MB]
Protein sequences (translated CDSs) in FASTA format, contains 35,478 proteins, corresponding to 26,597 gene models.


apercula_functional_annotation.annot.gz [gz file, 2.6MB]
Gene functional annotations in tab-delimited text format.



BioProject

BioProject Accession (NCBI)
A. perculaPRJNA436093external-link


Genomic reads

SRA AccessionLocal server repository
A. perculaPacBioT.B.D.[directory]
illuminaSRR6830278external-link[read1] | [read2]
SRR6834716external-link[read1] | [read2]
Hi-C (illumina)T.B.D.T.B.D.


RNA short reads

SRA AccessionLocal server repository
A. perculaBrainT.B.D.[directory]
GallbladderSRR6825294external-link[read1] | [read2]
GillSRR6825295external-link[read1] | [read2]
MuscleSRR6825296external-link[read1] | [read2]
FinSRR6825297external-link[read1] | [read2]
EyeSRR6825298external-link[read1] | [read2]
SkinSRR6825299external-link[read1] | [read2]
LiverSRR6825300external-link[read1] | [read2]
StomachSRR6825301external-link[read1] | [read2]
KidneySRR6825302external-link[read1] | [read2]


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